Target species | Target gene | Primer | Length (bp) | Sequence (5′ → 3′) | Size (bp) | Tm (°C) |
---|---|---|---|---|---|---|
Plant system (positive control) | 18S rRNA region | 18S rRNA_F | 25 | TCTGCCCTATCAACTTTCGATGGTA | 137 | 58 |
18S rRNA_R | 25 | AATTTGCGCGCCTGCTGCCTTCCTT | ||||
Aronia (Aronia melanocarpa) | matK | matK_F | 19 | CTTTACATTTATTACGACG | 110 | 54 |
matK_R | 19 | TAGGAGCAAGAATAATCG | ||||
trnL-F | trnL-F_F | 21 | TATCGTTTTGTTAGCGATTCA | 224 | 59 | |
trnL-F_R | 22 | CAAAGTTTCAGTACAGTACAAG | ||||
Blackberry (Rubus fruticosus) | trnL-F | trnL-F_F | 20 | ACTCTACTCTTTCACAAACC | 124 | 57 |
trnL-F_R | 20 | CACATTATTCAAAGATGCTG | ||||
rbcL | rbcL_F | 18 | GTTGGAGAGACCGTTTCG | 171 | 60 | |
rbcL_R | 23 | GTAATCGTGCATTATGATAGGAG | ||||
Cranberry (Vaccinium macrocarpon) | matK | matK_F | 20 | GGTTTTCAAAGACCCTTTCC | 120 | 60 |
matK_R | 21 | CATTCCCAGAAATTGACAAGG | ||||
rbcL | rbcL_F | 20 | ATCATATTCACTCGGGTACT | 94 | 59 | |
rbcL_R | 23 | TCAATATAATCATCACGCAGTAA | ||||
Strawberry (Fragaria × ananassa) | matK | matK_F | 18 | AACCAGGAAGAATCCATC | 173 | 54 |
matK_R | 19 | CATTGGAATAATTGGAAAC | ||||
trnL-F | trnL-F_F | 18 | ATAAGCAAGCCTTGTGTG | 179 | 60 | |
trnL-F_R | 17 | TTATCCAGGCCCTGGTC |