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Table 5 Detection of Orostachys species in eight commercial O. japonica products by qPCR using the developed primer sets

From: Markers for distinguishing Orostachys species by SYBR Green-based real-time PCR and verification of their application in commercial O. japonica food products

 

Powder (Gongju)

Powder (Haenam)

Dried (Haenam)

Dried (Yeoju)

Dried (Iksan)

Raw (Yanggu)

Powder (Kimcheon)

Dried (Jinju)

18S rRNA primer

10.94 ± 0.03

12.77 ± 0.07

12.2 ± 0.04

12.38 ± 0.08

12.06 ± 0.16

13.69 ± 0.31

11.77 ± 0.15

13.29 ± 0.17

O. japonica trnT-L primer

16.24 ± 0.17

16.01 ± 0.01

17.24 ± 0.2

18.19 ± 0.07

17.56 ± 0.08

11.27 ± 0.07

17.01 ± 0.06

17.36 ± 0.05

O. japonica ndhF primer

17.54 ± 0.04

17.27 ± 0.04

18.87 ± 0.32

18.98 ± 0.32

18.94 ± 0.03

12.26 ± 0.08

18.08 ± 0.09

19.23 ± 0.15

O. japonica rpoB primer

18.07 ± 0.14

17.86 ± 0.54

19.95 ± 0.38

19.61 ± 0.15

19.52 ± 0.10

12.98 ± 0.02

18.34 ± 0.05

19.47 ± 0.23

O. iwarenge and O. malacophyllus matK primer

ND

ND

ND

ND

33.75 ± 0.28

28.36 ± 0.37

ND

ND

O. iwarenge and O. malacophyllus trnS-G primer

33.86 ± 0.95

35.23 ± 3.37

32.6 ± 0.11

34.6 ± 1.61

30.58 ± 0.22

28.39 ± 0.11

NDa

32.39 ± 4.03

O. iwarenge and O. malacophyllus trnQ-rps16 primer

33.42 ± 0.63

34.31 ± 1.33

30.84 ± 2.78

33.96 ± 0.38

31.22 ± 0.22

27.59 ± 0.27

32.52 ± 0.95

33.87 ± 0.76

O. iwarenge and O. malacophyllus ycf2 primer

29.28 ± 0.13

34.15 ± 0.48

36.36 ± 0.23

34.53 ± 0.88

29.18 ± 0.34

27.27 ± 0.07

29.26 ± 0.05

31.88 ± 0.54

O. latiellipticus and O. ramosus matK primer

34.75 ± 1.65

34.99 ± 0.59

ND

ND

ND

ND

ND

ND

O. latiellipticus and O. ramosus trnT-L primer

24.91 ± 0.26

28.34 ± 0.1

31.22 ± 0.83

29.42 ± 0.31

28.46 ± 0.26

25.15 ± 0.35

28.68 ± 1.02

29.15 ± 0.88

O. latiellipticus and O. ramosus trnQ-rps16 primer

32.03 ± 0.36

31.24 ± 3.05

34.16 ± 1.28

33.84 ± 0.27

30.76 ± 0.43

28.61 ± 0.14

33.51 ± 0.64

32.71 ± 0.57

O. latiellipticus and O. ramosus ITS primer

24.8 ± 0.44

34.64 ± 0.66

35.33 ± 0.11

35.52 ± 0.91

33.21 ± 2.46

33.91 ± 0.75

33.98 ± 0.1

33.67 ± 0.93

O. margaritifolius ndhF primer

36.44 ± 0.74

ND

36.3 ± 2.01

37.02 ± 1.31

33.34 ± 0.46

33.73 ± 0.57

35.64 ± 0.23

36.23 ± 0.48

  1. ND (not determined) means a cycle threshold of over 40 cycles